Publications

2009

Walther, Michael, David Jeffries, Olivia C Finney, Madi Njie, Augustine Ebonyi, Susanne Deininger, Emma Lawrence, et al. (2009) 2009. “Distinct Roles for FOXP3 and FOXP3 CD4 T Cells in Regulating Cellular Immunity to Uncomplicated and Severe Plasmodium Falciparum Malaria.”. PLoS Pathogens 5 (4): e1000364. https://doi.org/10.1371/journal.ppat.1000364.

Failure to establish an appropriate balance between pro- and anti-inflammatory immune responses is believed to contribute to pathogenesis of severe malaria. To determine whether this balance is maintained by classical regulatory T cells (CD4(+) FOXP3(+) CD127(-/low); Tregs) we compared cellular responses between Gambian children (n = 124) with severe Plasmodium falciparum malaria or uncomplicated malaria infections. Although no significant differences in Treg numbers or function were observed between the groups, Treg activity during acute disease was inversely correlated with malaria-specific memory responses detectable 28 days later. Thus, while Tregs may not regulate acute malarial inflammation, they may limit memory responses to levels that subsequently facilitate parasite clearance without causing immunopathology. Importantly, we identified a population of FOXP3(-), CD45RO(+) CD4(+) T cells which coproduce IL-10 and IFN-gamma. These cells are more prevalent in children with uncomplicated malaria than in those with severe disease, suggesting that they may be the regulators of acute malarial inflammation.

2008

Wilkinson, Shane R, Martin C Taylor, David Horn, John M Kelly, and Ian Cheeseman. (2008) 2008. “A Mechanism for Cross-Resistance to Nifurtimox and Benznidazole in Trypanosomes.”. Proceedings of the National Academy of Sciences of the United States of America 105 (13): 5022-7. https://doi.org/10.1073/pnas.0711014105.

Nifurtimox and benznidazole are the front-line drugs used to treat Chagas disease, the most important parasitic infection in the Americas. These agents function as prodrugs and must be activated within the parasite to have trypanocidal effects. Despite >40 years of research, the mechanism(s) of action and resistance have remained elusive. Here, we report that in trypanosomes, both drugs are activated by a NADH-dependent, mitochondrially localized, bacterial-like, type I nitroreductase (NTR), and that down-regulation of this explains how resistance may emerge. Loss of a single copy of this gene in Trypanosoma cruzi, either through in vitro drug selection or by targeted gene deletion, is sufficient to cause significant cross-resistance to a wide range of nitroheterocyclic drugs. In Trypanosoma brucei, loss of a single NTR allele confers similar cross-resistance without affecting growth rate or the ability to establish an infection. This potential for drug resistance by a simple mechanism has important implications, because nifurtimox is currently undergoing phase III clinical trials against African trypanosomiasis.

  • Dia, Aliou, and Ian H Cheeseman. (2021) 2021. “Single-Cell Genome Sequencing of Protozoan Parasites.”. Trends in Parasitology 37 (9): 803-14. https://doi.org/10.1016/j.pt.2021.05.013.

    Despite considerable genetic variation within hosts, most parasite genome sequencing studies focus on bulk samples composed of millions of cells. Analysis of bulk samples is biased toward the dominant genotype, concealing cell-to-cell variation and rare variants. To tackle this, single-cell sequencing approaches have been developed and tailored to specific host-parasite systems. These are allowing the genetic diversity and kinship in complex parasite populations to be deciphered and for de novo genetic variation to be captured. Here, we outline the methodologies being used for single-cell sequencing of parasitic protozoans, such as Plasmodium and Leishmania spp., and how these tools are being applied to understand parasite biology.

    See also: Infectious Disease